Sample Filename File type Encoding Total Sequences Total Bases Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length median_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content S1_undiff S1_undiff.gz Conventional base calls Sanger / Illumina 1.9 100000.0 15.1 Mbp 0.0 151.0 47.0 99.383 151.0 151 pass pass pass pass fail pass pass pass pass pass fail S2_undiff S2_undiff.gz Conventional base calls Sanger / Illumina 1.9 100000.0 15.1 Mbp 0.0 151.0 55.0 98.623 151.0 151 pass pass warn pass fail warn pass pass pass pass fail S3_undiff S3_undiff.gz Conventional base calls Sanger / Illumina 1.9 100000.0 15.1 Mbp 0.0 151.0 47.0 99.453 151.0 151 pass pass pass pass fail pass pass pass pass pass fail S4_diff S4_diff.gz Conventional base calls Sanger / Illumina 1.9 100000.0 15.1 Mbp 0.0 151.0 49.0 99.381 151.0 151 pass pass warn pass fail pass pass pass pass pass fail S5_diff S5_diff.gz Conventional base calls Sanger / Illumina 1.9 100000.0 15.1 Mbp 0.0 151.0 55.0 97.286 151.0 151 pass pass pass pass fail warn pass pass pass pass fail S6_diff S6_diff.gz Conventional base calls Sanger / Illumina 1.9 100000.0 15.1 Mbp 0.0 151.0 50.0 99.291 151.0 151 pass pass pass pass fail warn pass pass pass pass fail