NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
12,918.4 |
| Mean read quality |
26.7 |
| Median read length |
12,886.0 |
| Median read quality |
30.7 |
| Number of reads |
17,830.0 |
| Read length N50 |
12,956.0 |
| STDEV read length |
900.1 |
| Total bases |
230,334,528.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
17830 (100.0%) 230.3Mb |
| >Q15 |
17830 (100.0%) 230.3Mb |
| >Q20 |
17830 (100.0%) 230.3Mb |
| >Q25 |
13897 (77.9%) 179.5Mb |
| >Q30 |
9513 (53.4%) 122.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (51) |
| 2 |
93.0 (666) |
| 3 |
93.0 (540) |
| 4 |
83.7 (1372) |
| 5 |
72.8 (5670) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16426 (31.6) |
| 2 |
15668 (22.3) |
| 3 |
15667 (25.4) |
| 4 |
15471 (39.5) |
| 5 |
15463 (20.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot